Variant report

Variant	rs17019159
Chromosome Location	chr2:36817436-36817437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36809008..36811077-chr2:36815075..36817974,3	MCF-7	breast:
2	chr2:36816372..36820679-chr2:36821932..36827532,8	K562	blood:
3	chr2:36809435..36813840-chr2:36817141..36820574,5	K562	blood:
4	chr2:36817392..36820041-chr2:36820581..36825790,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171055	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10490669	0.95[CHB][hapmap];0.88[YRI][hapmap]
rs10490670	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs17019115	0.91[CHB][hapmap]
rs17019147	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs17019149	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2287105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3770800	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs3770801	0.91[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:36790200-36818000	Strong transcription	Fetal Intestine Large	intestine
3	chr2:36792200-36824200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:36796000-36818000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:36796800-36818200	Weak transcription	Brain Substantia Nigra	brain
6	chr2:36798000-36818200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:36798200-36818000	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr2:36798400-36818600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:36799200-36818000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:36799200-36818200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:36799200-36819200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:36799200-36822600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:36799800-36818000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:36800200-36817600	Strong transcription	Liver	Liver
15	chr2:36801000-36817800	Strong transcription	HUVEC	blood vessel
16	chr2:36801600-36818000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:36801600-36818000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:36801800-36818400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:36802000-36818000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:36802000-36823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:36803600-36818000	Strong transcription	Dnd41	blood
22	chr2:36806400-36818400	Strong transcription	HepG2	liver
23	chr2:36806800-36818200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:36807200-36818000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:36807600-36823600	Weak transcription	Spleen	Spleen
26	chr2:36808600-36818200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:36808600-36823400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:36808600-36823800	Weak transcription	Fetal Kidney	kidney
29	chr2:36808800-36822400	Weak transcription	Stomach Mucosa	stomach
30	chr2:36808800-36823400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:36808800-36823400	Weak transcription	Small Intestine	intestine
32	chr2:36808800-36823600	Weak transcription	Aorta	Aorta
33	chr2:36809000-36823400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:36810400-36818000	Strong transcription	A549	lung
35	chr2:36810400-36818400	Strong transcription	HSMM	muscle
36	chr2:36810600-36823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr2:36810800-36822200	Weak transcription	Fetal Brain Male	brain
38	chr2:36811000-36822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:36811400-36821800	Weak transcription	Colonic Mucosa	Colon
40	chr2:36811400-36822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:36811400-36822600	Weak transcription	Gastric	stomach
42	chr2:36811400-36823400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:36811400-36823600	Weak transcription	Right Ventricle	heart
44	chr2:36811600-36818400	Strong transcription	Placenta	Placenta
45	chr2:36811600-36822200	Weak transcription	Thymus	Thymus
46	chr2:36811800-36818000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr2:36811800-36823600	Weak transcription	Pancreas	Pancrea
48	chr2:36812000-36823400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr2:36812200-36818200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:36812200-36818400	Weak transcription	Brain Cingulate Gyrus	brain

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