Variant report

Variant	rs17019530
Chromosome Location	chr4:93466887-93466888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11727401	0.93[ASN][1000 genomes]
rs11730343	0.90[ASN][1000 genomes]
rs11733785	0.90[ASN][1000 genomes]
rs11736155	0.81[ASN][1000 genomes]
rs11932549	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933444	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12508375	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1376115	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1376116	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17019538	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17019545	1.00[ASN][1000 genomes]
rs1971197	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4471526	1.00[ASN][1000 genomes]
rs62307821	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62307822	0.98[ASN][1000 genomes]
rs62307823	1.00[ASN][1000 genomes]
rs62307844	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307845	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307849	0.93[ASN][1000 genomes]
rs62307851	0.93[ASN][1000 genomes]
rs62307852	0.93[ASN][1000 genomes]
rs62307854	0.93[ASN][1000 genomes]
rs62307858	0.93[ASN][1000 genomes]
rs6532375	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6815704	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6848991	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851220	0.93[ASN][1000 genomes]
rs7659896	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7667109	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7677052	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7686758	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7700132	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005500	chr4:93359923-93590452	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv537184	chr4:93359923-93590452	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006957	chr4:93389054-93511561	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv879606	chr4:93391251-93479275	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1013199	chr4:93395509-93511052	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv594869	chr4:93434136-93480717	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv879607	chr4:93434872-93515166	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1014431	chr4:93464326-93618241	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537185	chr4:93464326-93618241	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93457200-93468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:93457200-93476600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:93460000-93475200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:93460000-93476600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:93466400-93468000	Enhancers	Fetal Brain Male	brain

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