Variant report

Variant	rs1701955
Chromosome Location	chr19:51476055-51476056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1654531	0.80[EUR][1000 genomes]
rs1654532	0.82[EUR][1000 genomes]
rs1701951	0.83[ASN][1000 genomes]
rs1722540	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51472800-51482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr19:51473000-51477400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr19:51473000-51480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:51473200-51476200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:51473200-51477600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr19:51473200-51479000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr19:51473200-51479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr19:51473200-51480800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr19:51473200-51482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:51473800-51479000	Weak transcription	NHEK	skin
11	chr19:51474800-51479000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:51474800-51479000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:51474800-51482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:51475600-51476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr19:51475600-51476400	Enhancers	HMEC	breast
16	chr19:51475600-51476600	Enhancers	Esophagus	oesophagus
17	chr19:51476000-51477400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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