Variant report

Variant	rs17019646
Chromosome Location	chr2:36961498-36961499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1015696	0.82[ASW][hapmap];0.82[LWK][hapmap];0.81[AFR][1000 genomes]
rs17019636	0.82[ASW][hapmap];0.82[LWK][hapmap]
rs2372711	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2372712	0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs3732071	1.00[CHD][hapmap]
rs72855804	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2762493	chr2:36958342-36965718	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv525132	chr2:36959486-36964751	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36942600-36968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36958000-36962000	Enhancers	Hela-S3	cervix
3	chr2:36958000-36968200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:36958000-36970800	Weak transcription	Ovary	ovary
5	chr2:36958200-36963600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:36958800-36961600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:36960200-36980400	Weak transcription	NHDF-Ad	bronchial
8	chr2:36960400-36961800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:36960400-36961800	Weak transcription	Placenta	Placenta
10	chr2:36960600-36964400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:36960800-36962800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:36960800-36963400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:36961000-36962600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr2:36961000-36971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:36961200-36961800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:36961200-36963000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:36961400-36961600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:36961400-36961600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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