Variant report

Variant	rs17020223
Chromosome Location	chr4:94098163-94098164
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1433649	1.00[EUR][1000 genomes]
rs17020140	1.00[EUR][1000 genomes]
rs17020349	1.00[EUR][1000 genomes]
rs17020351	1.00[EUR][1000 genomes]
rs17020365	1.00[EUR][1000 genomes]
rs34334785	1.00[EUR][1000 genomes]
rs35271550	1.00[EUR][1000 genomes]
rs5019027	1.00[EUR][1000 genomes]
rs55817376	1.00[EUR][1000 genomes]
rs56043153	1.00[EUR][1000 genomes]
rs56775228	1.00[EUR][1000 genomes]
rs57353227	1.00[EUR][1000 genomes]
rs58089679	1.00[EUR][1000 genomes]
rs59079995	1.00[EUR][1000 genomes]
rs59274911	1.00[EUR][1000 genomes]
rs59290808	1.00[EUR][1000 genomes]
rs59578568	1.00[EUR][1000 genomes]
rs59807691	1.00[EUR][1000 genomes]
rs60165132	1.00[EUR][1000 genomes]
rs6813258	1.00[EUR][1000 genomes]
rs6813469	1.00[EUR][1000 genomes]
rs6825178	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72872738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72872773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72872776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72872777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874908	1.00[EUR][1000 genomes]
rs72874911	1.00[EUR][1000 genomes]
rs72874912	1.00[EUR][1000 genomes]
rs72874914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874916	1.00[EUR][1000 genomes]
rs72874917	1.00[EUR][1000 genomes]
rs72874920	1.00[EUR][1000 genomes]
rs72874965	1.00[EUR][1000 genomes]
rs72874973	1.00[EUR][1000 genomes]
rs72874974	1.00[EUR][1000 genomes]
rs72874980	1.00[EUR][1000 genomes]
rs72874985	1.00[EUR][1000 genomes]
rs72874996	1.00[EUR][1000 genomes]
rs72874997	1.00[EUR][1000 genomes]
rs72876903	1.00[EUR][1000 genomes]
rs72876911	1.00[EUR][1000 genomes]
rs72876912	1.00[EUR][1000 genomes]
rs7666036	1.00[EUR][1000 genomes]
rs7666424	1.00[EUR][1000 genomes]
rs7671753	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1002664	chr4:94045490-94107687	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3450455	chr4:94047592-94111856	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv461588	chr4:94049584-94106172	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv594900	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv818254	chr4:94049584-94106172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3374701	chr4:94066329-94107927	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94080600-94101200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94094400-94100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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