Variant report

Variant	rs17021144
Chromosome Location	chr4:147074707-147074708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10519775	1.00[AMR][1000 genomes]
rs17021196	1.00[AMR][1000 genomes]
rs17021230	1.00[AMR][1000 genomes]
rs41463144	1.00[AMR][1000 genomes]
rs6847511	1.00[AMR][1000 genomes]
rs6857745	1.00[AMR][1000 genomes]
rs7662843	1.00[AMR][1000 genomes]
rs7664522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7667848	1.00[AMR][1000 genomes]
rs7683036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7694557	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461674	chr4:147047072-147143572	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595650	chr4:147047072-147143572	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1018859	chr4:147055618-147138397	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147067800-147075200	Weak transcription	Pancreas	Pancrea
2	chr4:147073400-147081000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:147074200-147075000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:147074400-147075400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:147074600-147075200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:147074600-147075400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:147074600-147075400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:147074600-147075400	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links