Variant report

Variant	rs17021148
Chromosome Location	chr3:28176545-28176546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1389156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021143	1.00[EUR][1000 genomes]
rs17021145	1.00[EUR][1000 genomes]
rs17021161	1.00[EUR][1000 genomes]
rs17021168	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17021173	0.91[AFR][1000 genomes]
rs17021185	0.84[AFR][1000 genomes]
rs1873834	0.81[AFR][1000 genomes]
rs1873836	1.00[CEU][hapmap]
rs6794980	1.00[CEU][hapmap]
rs980956	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv508214	chr3:28157554-28198530	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28175800-28177400	Enhancers	HepG2	liver
2	chr3:28176000-28176600	Enhancers	Fetal Intestine Large	intestine
3	chr3:28176200-28176600	Enhancers	Fetal Intestine Small	intestine
4	chr3:28176200-28177400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr3:28176200-28177600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:28176400-28176800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
7	chr3:28176400-28177000	Enhancers	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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