Variant report

Variant	rs17021175
Chromosome Location	chr2:37868687-37868688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QPCT-3	chr2:37832379-37870742	NONHSAT070127

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17021202	1.00[EUR][1000 genomes]
rs60910686	1.00[EUR][1000 genomes]
rs72881343	1.00[EUR][1000 genomes]
rs72882171	1.00[EUR][1000 genomes]
rs72882173	1.00[EUR][1000 genomes]
rs73928825	1.00[EUR][1000 genomes]
rs7578208	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv535645	chr2:37853282-37972640	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv535646	chr2:37853282-38014428	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv873880	chr2:37868214-37926046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37853600-37873200	Weak transcription	Liver	Liver
2	chr2:37853600-37897400	Weak transcription	Small Intestine	intestine
3	chr2:37857000-37871400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:37858800-37871400	Weak transcription	Aorta	Aorta
5	chr2:37860000-37871200	Weak transcription	Gastric	stomach
6	chr2:37860800-37873000	Weak transcription	Pancreas	Pancrea
7	chr2:37860800-37879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:37862000-37869400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:37862200-37870600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:37862400-37869200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:37862400-37870200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:37862800-37869400	Weak transcription	HUVEC	blood vessel
13	chr2:37863400-37875000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:37863600-37868800	Weak transcription	Fetal Brain Female	brain
15	chr2:37863600-37871400	Weak transcription	Lung	lung
16	chr2:37863600-37873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:37864200-37870200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr2:37864200-37871200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr2:37864200-37871200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:37864200-37871400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr2:37864200-37871400	Weak transcription	Spleen	Spleen
22	chr2:37864200-37880200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr2:37864400-37870600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:37864400-37871400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:37864400-37871400	Weak transcription	Adipose Nuclei	Adipose
26	chr2:37864400-37872000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:37864400-37879400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr2:37864600-37870200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr2:37864600-37871000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:37864800-37870200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr2:37865000-37869200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:37865000-37869800	Weak transcription	Primary B cells from cord blood	blood
33	chr2:37865200-37869000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:37865400-37869800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr2:37865600-37873000	Weak transcription	Ovary	ovary
36	chr2:37866400-37871400	Weak transcription	Brain Germinal Matrix	brain
37	chr2:37866600-37875200	Genic enhancers	HSMM	muscle
38	chr2:37866800-37870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr2:37866800-37875000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:37866800-37881000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:37867000-37869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:37867000-37870200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr2:37867000-37880600	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr2:37867200-37868800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:37867200-37868800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr2:37867200-37875000	Genic enhancers	NHDF-Ad	bronchial
47	chr2:37867400-37869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:37867400-37870200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr2:37867400-37872800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr2:37867400-37874800	Weak transcription	Fetal Intestine Small	intestine

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