Variant report

Variant	rs17021188
Chromosome Location	chr4:147099869-147099870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:147099369..147101389-chr4:147104400..147106028,2	MCF-7	breast:
2	chr4:147096699..147098795-chr4:147099511..147101268,2	MCF-7	breast:
3	chr4:147096162..147099903-chr4:147161380..147165203,4	MCF-7	breast:
4	chr4:147098952..147101592-chr4:147130358..147132148,2	K562	blood:

Variant related genes	Relation type
ENSG00000164167	Chromatin interaction
ENSG00000251010	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10004526	1.00[EUR][1000 genomes]
rs10015395	1.00[EUR][1000 genomes]
rs10025326	1.00[EUR][1000 genomes]
rs10029477	1.00[EUR][1000 genomes]
rs17021203	1.00[EUR][1000 genomes]
rs28418629	1.00[EUR][1000 genomes]
rs28590167	1.00[EUR][1000 genomes]
rs28690117	1.00[EUR][1000 genomes]
rs28896315	1.00[EUR][1000 genomes]
rs3775498	0.86[LWK][hapmap]
rs6851811	1.00[EUR][1000 genomes]
rs7356451	0.86[ASW][hapmap]
rs7356484	0.86[ASW][hapmap]
rs9993608	1.00[EUR][1000 genomes]
rs9993900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461674	chr4:147047072-147143572	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595650	chr4:147047072-147143572	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1018859	chr4:147055618-147138397	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147097600-147108800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:147097800-147101400	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:147097800-147104200	Weak transcription	Placenta	Placenta
4	chr4:147097800-147104600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:147097800-147108600	Weak transcription	HSMMtube	muscle
6	chr4:147097800-147108800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:147097800-147108800	Weak transcription	Esophagus	oesophagus
8	chr4:147097800-147111000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:147097800-147115400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:147098000-147102200	Enhancers	Fetal Heart	heart
11	chr4:147098000-147102800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:147098200-147101000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:147098200-147101200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:147098200-147102000	Enhancers	Brain Hippocampus Middle	brain
15	chr4:147098400-147100000	Enhancers	Brain Cingulate Gyrus	brain
16	chr4:147098400-147100200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr4:147098400-147100600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:147098400-147100600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:147098400-147100600	Weak transcription	Fetal Brain Female	brain
20	chr4:147098400-147100800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:147098400-147100800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:147098400-147100800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:147098400-147100800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:147098400-147100800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:147098400-147101000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:147098400-147101000	Enhancers	Brain Anterior Caudate	brain
27	chr4:147098400-147101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:147098400-147101400	Enhancers	HepG2	liver
29	chr4:147098400-147101600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr4:147098400-147101600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:147098400-147102000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr4:147098400-147102200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr4:147098400-147102400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:147098400-147102600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr4:147098400-147103200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr4:147098400-147103600	Weak transcription	A549	lung
37	chr4:147098400-147104200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:147098400-147104400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:147098400-147107400	Weak transcription	HSMM	muscle
40	chr4:147098400-147107800	Weak transcription	Fetal Kidney	kidney
41	chr4:147098400-147108000	Weak transcription	NH-A	brain
42	chr4:147098400-147108800	Weak transcription	NHLF	lung
43	chr4:147098400-147111400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:147098400-147118600	Weak transcription	Colonic Mucosa	Colon
45	chr4:147098600-147100200	Weak transcription	NHEK	skin
46	chr4:147098600-147100600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:147098600-147100800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:147098600-147101000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr4:147098600-147101000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:147098600-147101000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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