Variant report

Variant	rs17021198
Chromosome Location	chr1:213833465-213833466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6700506	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213829400-213833600	Enhancers	Fetal Intestine Large	intestine
2	chr1:213829400-213833800	Enhancers	Fetal Intestine Small	intestine
3	chr1:213829600-213833800	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:213830600-213834400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:213831800-213834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:213831800-213834800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:213832000-213834200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:213832800-213837200	Weak transcription	Pancreas	Pancrea
9	chr1:213833000-213833800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr1:213833200-213834800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:213833200-213834800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:213833200-213843400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:213833400-213835000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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