Variant report

Variant	rs17021371
Chromosome Location	chr3:28367083-28367084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:28365998..28367610-chr3:28375826..28378455,2	K562	blood:
2	chr3:28365019..28367884-chr3:28372377..28376315,3	K562	blood:
3	chr3:28366029..28369870-chr3:28388937..28390962,3	K562	blood:

Variant related genes	Relation type
ENSG00000163512	Chromatin interaction
ENSG00000206559	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17021351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021360	1.00[ASW][hapmap];0.89[MKK][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7639746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643610	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28317600-28380000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:28317600-28389400	Weak transcription	Esophagus	oesophagus
3	chr3:28343800-28383800	Weak transcription	Aorta	Aorta
4	chr3:28349800-28389400	Weak transcription	Gastric	stomach
5	chr3:28350000-28376800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:28356800-28376800	Weak transcription	Ovary	ovary
7	chr3:28357600-28370400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:28358600-28386400	Weak transcription	Thymus	Thymus
9	chr3:28358800-28389000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:28359600-28367600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr3:28359600-28377200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:28360000-28368400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr3:28360200-28367600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:28360200-28368200	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr3:28360200-28368400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:28360400-28367400	Strong transcription	Liver	Liver
17	chr3:28360400-28368400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:28360400-28383800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:28360400-28387400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:28360600-28368000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr3:28361400-28368600	Strong transcription	Placenta	Placenta
22	chr3:28361600-28368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:28361600-28368200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:28361600-28382200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:28362400-28368400	Strong transcription	Primary B cells from cord blood	blood
26	chr3:28362800-28368400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr3:28362800-28382400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:28362800-28387800	Weak transcription	HUVEC	blood vessel
29	chr3:28363200-28377200	Weak transcription	Fetal Kidney	kidney
30	chr3:28363600-28389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:28363800-28367600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:28363800-28380000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:28363800-28389600	Weak transcription	Spleen	Spleen
34	chr3:28364000-28368400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr3:28364000-28368400	Strong transcription	Fetal Lung	lung
36	chr3:28364000-28388400	Weak transcription	Fetal Brain Female	brain
37	chr3:28364200-28368400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:28364200-28368400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:28364200-28376800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:28364400-28367600	Strong transcription	Osteobl	bone
41	chr3:28364400-28368400	Strong transcription	NHDF-Ad	bronchial
42	chr3:28364400-28369000	Strong transcription	HSMM	muscle
43	chr3:28364400-28373200	Weak transcription	Brain Germinal Matrix	brain
44	chr3:28364600-28367200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:28364600-28367600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:28364600-28368000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:28364600-28368400	Strong transcription	Adipose Nuclei	Adipose
48	chr3:28364800-28368400	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:28364800-28369000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:28364800-28377000	Weak transcription	Brain Substantia Nigra	brain

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