Variant report

Variant	rs17021550
Chromosome Location	chr4:95284732-95284733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17021557	0.97[AFR][1000 genomes]
rs6815474	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs72888622	0.97[AFR][1000 genomes]
rs72888632	1.00[AFR][1000 genomes]
rs72888647	0.90[AFR][1000 genomes]
rs72888683	0.87[AFR][1000 genomes]
rs72888687	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv519228	chr4:95277311-95292702	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95283200-95285200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:95284200-95284800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:95284200-95285000	Enhancers	NH-A	brain
4	chr4:95284400-95284800	Flanking Active TSS	HUVEC	blood vessel
5	chr4:95284400-95285000	Enhancers	K562	blood
6	chr4:95284400-95285600	Enhancers	Osteobl	bone
7	chr4:95284600-95285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:95284600-95285000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:95284600-95285200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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