Variant report

Variant	rs17021907
Chromosome Location	chr3:28799676-28799677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10460988	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3208427	0.93[AFR][1000 genomes]
rs4082275	0.84[AFR][1000 genomes]
rs55803909	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57105102	0.81[EUR][1000 genomes]
rs62244484	0.80[AFR][1000 genomes]
rs6772590	0.84[AFR][1000 genomes]
rs6788452	0.93[AFR][1000 genomes]
rs6795363	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068811	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068812	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068820	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068823	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068851	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876651	chr3:28774258-28823156	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28798000-28804600	Weak transcription	Pancreas	Pancrea
2	chr3:28798400-28812200	Weak transcription	Aorta	Aorta
3	chr3:28799400-28803000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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