Variant report

Variant	rs17022049
Chromosome Location	chr2:99510759-99510760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1599956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17021962	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17022042	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022046	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4571099	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4851168	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4851169	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4851186	1.00[AFR][1000 genomes]
rs59878807	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72957614	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958693	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs925883	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925884	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs925885	0.95[AMR][1000 genomes]
rs956166	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582518	chr2:99498774-99546355	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99500000-99517000	Weak transcription	Gastric	stomach
2	chr2:99509400-99511200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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