Variant report

Variant	rs17022377
Chromosome Location	chr4:95783025-95783026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10516955	0.87[AMR][1000 genomes]
rs12508087	0.87[YRI][hapmap]
rs13103743	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs13116658	0.94[YRI][hapmap]
rs13123639	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13139748	0.86[YRI][hapmap]
rs13144015	0.91[AFR][1000 genomes]
rs17022123	0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs3775006	0.89[AFR][1000 genomes]
rs3775007	0.86[LWK][hapmap];0.80[MKK][hapmap];0.94[YRI][hapmap]
rs4456963	0.87[YRI][hapmap]
rs66816682	0.87[AMR][1000 genomes]
rs6828203	1.00[AMR][1000 genomes]
rs6842938	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs72669101	0.84[EUR][1000 genomes]
rs7673420	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17022377	SLC22A6	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95781200-95791400	Weak transcription	A549	lung
4	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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