The 2.0 version of rSNPBase

Variant report

Variant rs17022672
Chromosome Location chr1:214522149-214522150
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
2 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
3 chr1:214503200-214537800 Weak transcription Gastric stomach
4 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:214507000-214529800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:214508400-214524600 Weak transcription Lung lung
7 chr1:214508400-214524800 Weak transcription Spleen Spleen
8 chr1:214508400-214529600 Weak transcription Pancreas Pancrea
9 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
10 chr1:214508800-214528600 Weak transcription Fetal Intestine Large intestine
11 chr1:214509200-214523200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:214511400-214524800 Weak transcription Right Ventricle heart
13 chr1:214511400-214529400 Weak transcription Aorta Aorta
14 chr1:214511400-214530400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:214511400-214531200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr1:214511600-214522400 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:214511600-214528000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:214511800-214528000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:214512000-214537000 Weak transcription Rectal Smooth Muscle rectum
20 chr1:214512400-214524600 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr1:214514000-214522600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr1:214514000-214523200 Strong transcription Osteobl bone
24 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:214514400-214523000 Weak transcription Placenta Amnion Placenta Amnion
26 chr1:214514600-214523200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:214514800-214526400 Weak transcription Fetal Stomach stomach
28 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
29 chr1:214515800-214522400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:214516000-214522200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:214516000-214523200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:214516200-214522800 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr1:214516400-214522600 Strong transcription HSMM muscle
34 chr1:214517200-214522200 Strong transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:214517800-214523200 Weak transcription Colon Smooth Muscle Colon
36 chr1:214518000-214522400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:214518000-214524600 Weak transcription Left Ventricle heart
38 chr1:214518400-214523800 Weak transcription Primary T cells fromperipheralblood blood
39 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
40 chr1:214518600-214523200 Weak transcription A549 lung
41 chr1:214518600-214524800 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:214518600-214524800 Weak transcription Stomach Smooth Muscle stomach
43 chr1:214518600-214529000 Weak transcription Ovary ovary
44 chr1:214518800-214522400 Weak transcription Fetal Heart heart
45 chr1:214518800-214524600 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:214518800-214528800 Weak transcription Fetal Kidney kidney
47 chr1:214519000-214523000 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr1:214519000-214523000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:214519000-214523400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:214519000-214524000 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015