Variant report

Variant	rs17022915
Chromosome Location	chr3:85577613-85577614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10511075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511081	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10511085	0.84[CHB][hapmap]
rs10865610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11127892	0.82[CHB][hapmap]
rs11127896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11919099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11920184	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11923343	0.89[JPT][hapmap]
rs12054398	0.82[CHB][hapmap]
rs12485813	0.82[CHB][hapmap]
rs12486274	0.82[CHB][hapmap]
rs12487886	0.82[CHB][hapmap]
rs12488750	0.82[CHB][hapmap]
rs12489307	0.88[JPT][hapmap]
rs12493645	0.82[CHB][hapmap]
rs12632140	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12634226	0.82[CHB][hapmap]
rs12636904	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12637027	0.88[JPT][hapmap]
rs12637214	0.82[CHB][hapmap]
rs12637236	0.82[CHB][hapmap]
rs12638040	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12638154	0.82[CHB][hapmap]
rs12638296	0.82[CHB][hapmap]
rs12638482	0.84[CHB][hapmap]
rs12639409	0.82[CHB][hapmap]
rs1375545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1375551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1375554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1375555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1375557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1375559	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1449372	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449373	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449381	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449382	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449391	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1463205	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1463206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1463208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1470635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1542248	0.84[CHB][hapmap]
rs1549979	0.84[CHB][hapmap]
rs1597315	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17022974	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17023022	0.82[CHB][hapmap]
rs17456763	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17456820	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17459563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17460701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17515586	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17516256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17516284	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17516346	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17517121	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17518584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17519241	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1865250	0.84[CHB][hapmap]
rs1865251	0.84[CHB][hapmap]
rs1865252	0.84[CHB][hapmap]
rs1868532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1900914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1900918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1991872	0.84[CHB][hapmap]
rs2029130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2029133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053108	0.84[CHB][hapmap]
rs2069123	0.84[CHB][hapmap]
rs2082556	0.84[CHB][hapmap]
rs2117153	0.84[CHB][hapmap]
rs2122233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2122236	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2167044	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2326309	0.84[CHB][hapmap]
rs2326320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28655875	0.84[CHB][hapmap]
rs35827242	0.84[CHB][hapmap]
rs4441668	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4502590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4856271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4856572	0.84[CHB][hapmap]
rs4856590	0.90[JPT][hapmap]
rs4856596	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs58834564	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62250471	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62250717	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62250724	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62250755	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62250759	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62252461	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62253963	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6549036	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6549039	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6549040	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6549041	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6549043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs66963835	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67174538	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6762535	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6762733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6766690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6767245	0.82[CHB][hapmap]
rs6767256	0.82[CHB][hapmap]
rs6767921	0.82[CHB][hapmap]
rs6779752	0.88[JPT][hapmap]
rs6780968	0.84[CHB][hapmap]
rs6788098	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6790090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6790699	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6791938	0.82[CHB][hapmap]
rs6794866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6801823	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6804845	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs68102233	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7609594	0.84[CHB][hapmap]
rs7614148	0.84[CHB][hapmap]
rs7616458	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7617356	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7618429	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7620313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7624108	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7626594	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7632056	0.88[JPT][hapmap]
rs7634761	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7637879	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7653790	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs919874	0.82[CHB][hapmap]
rs956281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs960986	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9713905	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9844110	0.82[AMR][1000 genomes]
rs9864170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs993136	0.84[CHB][hapmap]
rs993137	0.84[CHB][hapmap]
rs993716	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1009804	chr3:85521984-85581386	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536626	chr3:85527837-85578368	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1002139	chr3:85534559-85630146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1006433	chr3:85535783-85631667	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv590906	chr3:85539816-85626054	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1008269	chr3:85544536-85617198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv536627	chr3:85544536-85617198	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv527642	chr3:85551353-85619451	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1007503	chr3:85558527-85617198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1013950	chr3:85561009-85631527	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv536628	chr3:85561009-85631527	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1006141	chr3:85577197-85619079	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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