Variant report

Variant	rs17022924
Chromosome Location	chr4:95965655-95965656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17023047	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17023081	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28549280	1.00[AMR][1000 genomes]
rs28669077	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95948200-95966600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95957000-95972400	Weak transcription	Psoas Muscle	Psoas
3	chr4:95963800-95968200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:95964400-95966200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:95964600-95967000	Enhancers	Brain Angular Gyrus	brain
6	chr4:95964800-95967200	Enhancers	Fetal Kidney	kidney
7	chr4:95965200-95966600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:95965200-95967200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:95965400-95965800	Enhancers	Fetal Stomach	stomach
10	chr4:95965400-95965800	Flanking Active TSS	A549	lung
11	chr4:95965400-95966000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr4:95965400-95966000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:95965400-95966000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:95965400-95966000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:95965400-95966000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr4:95965400-95966400	Weak transcription	Fetal Brain Female	brain
17	chr4:95965400-95966600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:95965400-95966800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:95965400-95966800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:95965400-95966800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:95965400-95967000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:95965400-95967000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:95965400-95967000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:95965400-95967000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr4:95965400-95967000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:95965400-95967000	Enhancers	Brain Germinal Matrix	brain
27	chr4:95965400-95967000	Enhancers	Brain Substantia Nigra	brain
28	chr4:95965400-95967000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr4:95965400-95967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:95965600-95965800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr4:95965600-95965800	Active TSS	Brain Anterior Caudate	brain
32	chr4:95965600-95965800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:95965600-95966000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:95965600-95966000	Enhancers	Fetal Lung	lung
35	chr4:95965600-95966200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:95965600-95966800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr4:95965600-95967000	Enhancers	Aorta	Aorta
38	chr4:95965600-95967000	Enhancers	Brain Cingulate Gyrus	brain
39	chr4:95965600-95967000	Enhancers	NH-A	brain
40	chr4:95965600-95967400	Enhancers	Ovary	ovary
41	chr4:95965600-95967800	Enhancers	Brain Hippocampus Middle	brain

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