Variant report

Variant	rs17022969
Chromosome Location	chr4:96005829-96005830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10009874	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10011534	1.00[EUR][1000 genomes]
rs1470408	1.00[EUR][1000 genomes]
rs16996451	0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17022601	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17022763	1.00[EUR][1000 genomes]
rs17022921	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022927	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17022948	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55770035	1.00[EUR][1000 genomes]
rs60228393	1.00[EUR][1000 genomes]
rs72878195	1.00[EUR][1000 genomes]
rs72889518	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96003800-96011600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:96004000-96006200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:96004800-96009200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:96005600-96006200	Enhancers	Fetal Thymus	thymus
5	chr4:96005600-96006200	Enhancers	Thymus	Thymus
6	chr4:96005600-96006400	Enhancers	Primary T cells from cord blood	blood
7	chr4:96005600-96006600	Flanking Active TSS	A549	lung
8	chr4:96005600-96008400	Enhancers	HMEC	breast
9	chr4:96005600-96008800	Flanking Active TSS	Dnd41	blood
10	chr4:96005600-96009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:96005600-96009600	Enhancers	NHEK	skin
12	chr4:96005800-96006400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr4:96005800-96006600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:96005800-96006600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr4:96005800-96006600	Enhancers	Fetal Kidney	kidney
16	chr4:96005800-96006800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:96005800-96006800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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