Variant report

Variant	rs17022993
Chromosome Location	chr4:148207048-148207049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17022825	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148195200-148213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:148205600-148207400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:148205600-148207400	Enhancers	HMEC	breast
4	chr4:148206400-148207200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:148206400-148208400	Weak transcription	Hela-S3	cervix
6	chr4:148206600-148208400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:148206800-148208200	Weak transcription	NHEK	skin
8	chr4:148206800-148208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:148207000-148207400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:148207000-148207400	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr4:148207000-148208800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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