The 2.0 version of rSNPBase

Variant report

Variant rs17023108
Chromosome Location chr1:119576904-119576905
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:119563600-119581200 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:119568200-119585400 Weak transcription Brain Hippocampus Middle brain
3 chr1:119568200-119611200 Weak transcription Hela-S3 cervix
4 chr1:119568400-119578600 Weak transcription Rectal Smooth Muscle rectum
5 chr1:119569600-119587200 Weak transcription Fetal Intestine Small intestine
6 chr1:119569600-119589400 Weak transcription Psoas Muscle Psoas
7 chr1:119570000-119586600 Weak transcription Spleen Spleen
8 chr1:119570600-119582400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:119570600-119589200 Weak transcription Colon Smooth Muscle Colon
10 chr1:119570600-119589600 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr1:119570800-119583200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:119571000-119582800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:119571000-119582800 Weak transcription HMEC breast
14 chr1:119571000-119582800 Weak transcription NHEK skin
15 chr1:119571000-119583400 Weak transcription HSMM muscle
16 chr1:119571000-119589400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:119571200-119584600 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr1:119571200-119585000 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:119571200-119589400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:119571400-119613200 Weak transcription Pancreas Pancrea
21 chr1:119571600-119588200 Weak transcription Fetal Intestine Large intestine
22 chr1:119571600-119602200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:119571800-119577600 Weak transcription Brain Substantia Nigra brain
24 chr1:119571800-119589000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:119571800-119612400 Weak transcription Gastric stomach
26 chr1:119572000-119586800 Weak transcription Stomach Mucosa stomach
27 chr1:119572200-119589400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:119572600-119589200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:119572800-119583600 Weak transcription Small Intestine intestine
30 chr1:119572800-119589600 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:119573000-119577000 Strong transcription Left Ventricle heart
32 chr1:119573000-119577200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:119573200-119577200 Strong transcription Primary T cells from cord blood blood
34 chr1:119573200-119577400 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr1:119573400-119580400 Weak transcription Colonic Mucosa Colon
36 chr1:119573400-119599800 Weak transcription Fetal Stomach stomach
37 chr1:119573600-119588000 Weak transcription Fetal Kidney kidney
38 chr1:119573800-119577200 Strong transcription Adipose Nuclei Adipose
39 chr1:119574000-119587000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:119574200-119577000 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr1:119574200-119577200 Strong transcription Primary B cells from cord blood blood
42 chr1:119574200-119587000 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr1:119574200-119589600 Weak transcription Placenta Amnion Placenta Amnion
44 chr1:119574200-119590000 Weak transcription Thymus Thymus
45 chr1:119574400-119588400 Weak transcription Fetal Lung lung
46 chr1:119574600-119577000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
47 chr1:119574800-119577000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:119574800-119577000 Strong transcription Skeletal Muscle Female skeletal muscle
49 chr1:119575000-119577000 Strong transcription Ovary ovary
50 chr1:119575000-119585800 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015