Variant report

Variant	rs17023503
Chromosome Location	chr2:100734638-100734639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13397886	0.93[ASN][1000 genomes]
rs1437377	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17023500	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023526	0.97[ASN][1000 genomes]
rs17437538	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309750	0.97[ASN][1000 genomes]
rs62149356	0.97[ASN][1000 genomes]
rs62149357	0.97[ASN][1000 genomes]
rs6706188	0.97[ASN][1000 genomes]
rs73966422	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100730200-100742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:100730800-100746400	Weak transcription	Spleen	Spleen
3	chr2:100731800-100742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:100732000-100735400	Weak transcription	Thymus	Thymus
5	chr2:100732000-100749400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:100732000-100754400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:100732200-100736000	Weak transcription	Primary T cells from cord blood	blood
8	chr2:100732400-100736000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100732600-100735000	ZNF genes & repeats	Dnd41	blood
10	chr2:100733400-100735200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:100733400-100735800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr2:100733600-100734800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr2:100734000-100736800	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr2:100734400-100748000	Weak transcription	Adipose Nuclei	Adipose
15	chr2:100734600-100735600	Weak transcription	Fetal Thymus	thymus
16	chr2:100734600-100737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:100734600-100742200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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