Variant report

Variant	rs17023642
Chromosome Location	chr4:96292396-96292397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12643832	0.92[EUR][1000 genomes]
rs12646682	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1483750	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17023485	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
3	chr4:96285600-96293200	Weak transcription	Fetal Heart	heart
4	chr4:96285800-96295400	Weak transcription	Fetal Kidney	kidney
5	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:96290600-96293000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:96291600-96292800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:96291600-96293400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:96291600-96293400	Enhancers	Brain Angular Gyrus	brain
10	chr4:96291600-96293600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:96291600-96293600	Enhancers	Brain Anterior Caudate	brain
12	chr4:96291600-96293600	Enhancers	Brain Hippocampus Middle	brain
13	chr4:96291600-96293600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr4:96291600-96294200	Enhancers	Brain Substantia Nigra	brain
15	chr4:96291600-96294800	Enhancers	Brain Cingulate Gyrus	brain
16	chr4:96291800-96292400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:96291800-96292600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:96291800-96292600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:96291800-96293400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:96292000-96293000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:96292000-96295600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:96292200-96292600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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