Variant report

Variant	rs17023662
Chromosome Location	chr1:215077375-215077376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10494985	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12129514	0.94[ASN][1000 genomes]
rs12139509	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12750128	0.92[ASN][1000 genomes]
rs1336948	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17023635	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17023721	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17023742	0.92[ASN][1000 genomes]
rs17023828	0.94[ASN][1000 genomes]
rs1993180	0.95[ASN][1000 genomes]
rs2859911	0.94[ASN][1000 genomes]
rs60630707	0.94[ASN][1000 genomes]
rs72743815	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215076400-215077600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:215077000-215078000	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links