Variant report

Variant	rs17024389
Chromosome Location	chr1:215364192-215364193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17024390	0.97[AFR][1000 genomes]
rs17024396	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215364800	Weak transcription	NHLF	lung
2	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
3	chr1:215356200-215364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:215356200-215365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:215362400-215364600	Weak transcription	Osteobl	bone
6	chr1:215362400-215365200	Weak transcription	HSMM	muscle
7	chr1:215362600-215364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:215363000-215364800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:215363600-215364200	Genic enhancers	NHDF-Ad	bronchial
10	chr1:215363600-215364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:215364000-215365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:215364000-215366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:215364000-215367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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