Variant report

Variant	rs17024445
Chromosome Location	chr2:40080723-40080724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490332	1.00[MEX][hapmap]
rs17024166	1.00[MEX][hapmap]
rs17024307	1.00[MEX][hapmap]
rs17024422	1.00[AMR][1000 genomes]
rs17024436	1.00[AMR][1000 genomes]
rs17038962	1.00[MEX][hapmap]
rs72944409	1.00[AMR][1000 genomes]
rs72944411	1.00[AMR][1000 genomes]
rs72944421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003593	chr2:40009597-40165666	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535651	chr2:40009597-40165666	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv873891	chr2:40046658-40173905	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916300	chr2:40079899-40339019	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv430947	chr2:40080723-40141649	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17024445	RNF212	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40077400-40083600	Enhancers	Primary hematopoietic stem cells	blood
2	chr2:40079400-40083000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:40079400-40087600	Weak transcription	HMEC	breast
4	chr2:40079600-40081800	Weak transcription	Primary B cells from cord blood	blood
5	chr2:40079800-40081000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:40079800-40081200	Enhancers	Fetal Thymus	thymus
7	chr2:40079800-40083400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:40080000-40081600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:40080200-40080800	Weak transcription	HSMM	muscle
10	chr2:40080200-40081000	Enhancers	Thymus	Thymus
11	chr2:40080200-40081000	Enhancers	Dnd41	blood
12	chr2:40080200-40081600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:40080600-40080800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:40080600-40080800	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:40080600-40080800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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