Variant report

Variant	rs17024479
Chromosome Location	chr4:149124743-149124744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr4:149124604-149125245	ECC-1	luminal epithelium:	n/a	n/a
2	RAD21	chr4:149124616-149124882	H1-hESC	embryonic stem cell:	n/a	n/a
3	GATA3	chr4:149124694-149125099	T-47D	breast:	n/a	n/a
4	NFIC	chr4:149124556-149125304	ECC-1	luminal epithelium:	n/a	n/a
5	USF1	chr4:149124486-149124772	H1-hESC	embryonic stem cell:	n/a	n/a
6	TCF12	chr4:149124631-149125324	ECC-1	luminal epithelium:	n/a	n/a
7	CHD2	chr4:149124593-149124988	H1-hESC	embryonic stem cell:	n/a	chr4:149124809-149124819
8	TEAD4	chr4:149124506-149124909	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr4:149124554-149124754	H1-hESC	embryonic stem cell:	n/a	n/a
10	EP300	chr4:149124558-149125269	ECC-1	luminal epithelium:	n/a	chr4:149124596-149124610
11	FOXM1	chr4:149124614-149125302	ECC-1	luminal epithelium:	n/a	n/a
12	RFX5	chr4:149124532-149124805	H1-hESC	embryonic stem cell:	n/a	chr4:149124626-149124635
13	TEAD4	chr4:149124668-149125183	ECC-1	luminal epithelium:	n/a	n/a
14	KAP1	chr4:149124668-149125159	HEK293	kidney:	n/a	n/a
15	TEAD4	chr4:149124689-149125236	ECC-1	luminal epithelium:	n/a	n/a
16	MAX	chr4:149124497-149124831	H1-hESC	embryonic stem cell:	n/a	n/a
17	NFIC	chr4:149124646-149125117	ECC-1	luminal epithelium:	n/a	n/a
18	NANOG	chr4:149124607-149124877	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149120620..149122902-chr4:149123252..149125690,3	K562	blood:
2	chr4:149120620..149122902-chr4:149123483..149125690,2	K562	blood:

No data

Variant related genes	Relation type
NR3C2	TF binding region
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10026186	1.00[EUR][1000 genomes]
rs17024401	1.00[EUR][1000 genomes]
rs3910055	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6839547	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:149114600-149125000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:149115600-149125000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:149116000-149124800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:149117600-149125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:149122800-149126800	Enhancers	Fetal Heart	heart
10	chr4:149123000-149125200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:149123200-149124800	Enhancers	Small Intestine	intestine
12	chr4:149123400-149125000	Enhancers	Ovary	ovary
13	chr4:149123400-149125200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:149123400-149126200	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:149123600-149125000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:149123600-149125000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:149123600-149125200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:149123600-149125200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:149123600-149125400	Weak transcription	Brain Substantia Nigra	brain
20	chr4:149123600-149125600	Enhancers	Brain Anterior Caudate	brain
21	chr4:149123600-149125600	Enhancers	Colon Smooth Muscle	Colon
22	chr4:149123600-149126000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:149123600-149126400	Enhancers	Fetal Kidney	kidney
24	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
25	chr4:149123800-149125200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:149124000-149125200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr4:149124000-149125200	Active TSS	Stomach Smooth Muscle	stomach
28	chr4:149124000-149125600	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:149124000-149131600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:149124000-149133200	Weak transcription	Left Ventricle	heart
31	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
32	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
33	chr4:149124200-149124800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:149124200-149125000	Active TSS	Liver	Liver
35	chr4:149124200-149125200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr4:149124200-149125600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:149124200-149126400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:149124400-149124800	Weak transcription	Adipose Nuclei	Adipose
39	chr4:149124400-149124800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:149124400-149124800	Weak transcription	Fetal Intestine Large	intestine
41	chr4:149124400-149125000	Active TSS	Right Atrium	heart
42	chr4:149124400-149125000	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr4:149124400-149125000	Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr4:149124400-149125200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr4:149124600-149124800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:149124600-149124800	Enhancers	H9 Cell Line	embryonic stem cell
47	chr4:149124600-149124800	Enhancers	Fetal Muscle Leg	muscle
48	chr4:149124600-149124800	Active TSS	Psoas Muscle	Psoas
49	chr4:149124600-149125000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:149124600-149125200	Enhancers	H1 Cell Line	embryonic stem cell

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