Variant report

Variant	rs17024544
Chromosome Location	chr4:96679433-96679434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10024465	1.00[AMR][1000 genomes]
rs10516984	1.00[AMR][1000 genomes]
rs28516518	1.00[AMR][1000 genomes]
rs72884052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96665800-96682200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:96666600-96682800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:96677400-96680200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:96677600-96680000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:96677800-96679800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:96677800-96680000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:96677800-96682200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:96678000-96680000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:96678200-96680000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:96678600-96680000	Enhancers	Dnd41	blood
11	chr4:96678800-96679800	Enhancers	Primary T cells from cord blood	blood
12	chr4:96678800-96680600	Enhancers	HUVEC	blood vessel
13	chr4:96679000-96681800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:96679200-96679600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:96679400-96679800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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