Variant report

Variant	rs17025248
Chromosome Location	chr4:149711604-149711605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17025135	1.00[AFR][1000 genomes]
rs2103064	1.00[AMR][1000 genomes]
rs56902507	1.00[AMR][1000 genomes]
rs60476529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763397	chr4:149407663-149714436	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149704000-149716400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:149708400-149716200	Weak transcription	Small Intestine	intestine
3	chr4:149709200-149715600	Weak transcription	Left Ventricle	heart
4	chr4:149709400-149716600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:149709600-149715600	Weak transcription	Stomach Mucosa	stomach
6	chr4:149709800-149716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:149710200-149712000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:149710800-149712600	Enhancers	HMEC	breast
9	chr4:149711000-149712600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:149711000-149712800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:149711400-149712200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:149711400-149712200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:149711400-149716400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:149711400-149716600	Weak transcription	Placenta	Placenta
15	chr4:149711600-149711800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:149711600-149712000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:149711600-149712000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:149711600-149712600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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