Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12083315	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084494	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090884	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026074	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17026077	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17026080	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17026083	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17042203	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55849270	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57958865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58877005	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60354981	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61445397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143941	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143943	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143944	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143945	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143946	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143947	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74143955	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873172	chr1:216144827-216281673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216267000-216269800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:216267200-216269400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:216267600-216268400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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