Variant report

Variant	rs17026097
Chromosome Location	chr2:40734377-40734378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12468667	0.85[AMR][1000 genomes]
rs12479405	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12619139	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17026094	0.82[EUR][1000 genomes]
rs2301342	1.00[EUR][1000 genomes]
rs4952627	0.85[AMR][1000 genomes]
rs6736914	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72613873	0.85[AMR][1000 genomes]
rs72613874	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72613875	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72613876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40727000-40736000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:40727000-40736000	Weak transcription	Left Ventricle	heart
3	chr2:40734000-40735800	ZNF genes & repeats	Fetal Heart	heart
4	chr2:40734200-40737400	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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