Variant report

Variant	rs17026257
Chromosome Location	chr4:97934918-97934919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1013969	0.86[AFR][1000 genomes]
rs17026267	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17026268	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17026303	0.93[AFR][1000 genomes]
rs17026307	0.93[AFR][1000 genomes]
rs17026400	1.00[EUR][1000 genomes]
rs28415240	1.00[EUR][1000 genomes]
rs2903080	1.00[EUR][1000 genomes]
rs56009753	1.00[EUR][1000 genomes]
rs56784394	1.00[EUR][1000 genomes]
rs9997638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1005819	chr4:97930860-97957312	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97928800-97936200	Weak transcription	Fetal Brain Male	brain
2	chr4:97933800-97935600	Enhancers	Fetal Intestine Small	intestine
3	chr4:97934000-97935600	Enhancers	Fetal Intestine Large	intestine
4	chr4:97934600-97935200	Enhancers	Fetal Kidney	kidney
5	chr4:97934600-97936000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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