Variant report

Variant	rs17026299
Chromosome Location	chr4:97949530-97949531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17026191	1.00[AFR][1000 genomes]
rs17026242	1.00[AFR][1000 genomes]
rs17026248	1.00[AFR][1000 genomes]
rs17026265	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1005819	chr4:97930860-97957312	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97948200-97949600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:97948400-97953400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:97948600-97949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:97948600-97950000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:97948600-97950000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:97949400-97949600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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