Variant report

Variant	rs17026368
Chromosome Location	chr2:85739076-85739077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85719370..85721656-chr2:85738688..85740895,2	MCF-7	breast:
2	chr2:85736760..85739875-chr2:85763760..85768991,6	K562	blood:
3	chr2:85738083..85740030-chr2:85763581..85767374,3	K562	blood:
4	chr2:85739058..85741304-chr2:85742843..85744856,2	K562	blood:
5	chr2:85736886..85739082-chr2:85765100..85766701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168906	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9751373	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005351	chr2:85242657-85774909	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
2	nsv535803	chr2:85242657-85774909	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
3	nsv834283	chr2:85609500-85755708	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85732400-85742600	Weak transcription	Fetal Intestine Large	intestine
2	chr2:85732400-85743800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:85732400-85744200	Weak transcription	Gastric	stomach
4	chr2:85733200-85742200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:85733200-85743800	Weak transcription	Esophagus	oesophagus
6	chr2:85733400-85742200	Weak transcription	Psoas Muscle	Psoas
7	chr2:85733600-85750600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:85734600-85740800	Weak transcription	Right Atrium	heart
9	chr2:85734600-85750800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:85734600-85762000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:85734800-85743600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:85737800-85739800	Enhancers	Fetal Muscle Leg	muscle
13	chr2:85738000-85739200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:85738000-85739200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:85738000-85739200	Enhancers	Adipose Nuclei	Adipose
16	chr2:85738000-85739200	Enhancers	A549	lung
17	chr2:85738000-85739400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr2:85738000-85739600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr2:85738200-85739200	Enhancers	HSMM	muscle
20	chr2:85738400-85741000	Enhancers	Fetal Muscle Trunk	muscle
21	chr2:85738600-85739200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr2:85738600-85739200	Enhancers	HSMMtube	muscle
23	chr2:85738600-85739200	Enhancers	NHDF-Ad	bronchial
24	chr2:85738600-85739800	Enhancers	Colonic Mucosa	Colon
25	chr2:85738600-85739800	Enhancers	Hela-S3	cervix
26	chr2:85738600-85740000	Weak transcription	Stomach Mucosa	stomach
27	chr2:85738800-85742200	Weak transcription	HepG2	liver
28	chr2:85738800-85743400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr2:85738800-85744200	Weak transcription	Small Intestine	intestine
30	chr2:85739000-85742200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr2:85739000-85742200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:85739000-85742400	Weak transcription	Pancreas	Pancrea
33	chr2:85739000-85743400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:85739000-85743400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr2:85739000-85743400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:85739000-85743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:85739000-85743600	Weak transcription	HUVEC	blood vessel
38	chr2:85739000-85743800	Weak transcription	Placenta	Placenta

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