Variant report

Variant	rs17027802
Chromosome Location	chr4:99507088-99507089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99499694..99502354-chr4:99504624..99508480,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10026446	0.89[CHB][hapmap]
rs10489125	0.90[CHB][hapmap]
rs1547382	0.81[CHB][hapmap]
rs17027799	0.90[CHB][hapmap]
rs4699654	0.81[CHB][hapmap]
rs7667273	0.90[CHB][hapmap]
rs9993039	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99490800-99509000	Weak transcription	HSMM	muscle
2	chr4:99497200-99510200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:99498600-99508000	Enhancers	Brain Anterior Caudate	brain
4	chr4:99498800-99507800	Enhancers	Brain Hippocampus Middle	brain
5	chr4:99500000-99508000	Weak transcription	Spleen	Spleen
6	chr4:99500400-99508000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:99500800-99508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:99502200-99508200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:99502600-99507200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:99502600-99507400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:99502600-99508000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:99502600-99508000	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:99502800-99507800	Weak transcription	NH-A	brain
14	chr4:99503000-99507200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:99503400-99508000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:99503600-99508000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:99503600-99508000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:99503600-99508000	Weak transcription	Gastric	stomach
19	chr4:99504000-99507400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:99504200-99507800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr4:99504200-99509200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:99504600-99507800	Enhancers	Fetal Brain Female	brain
23	chr4:99504800-99507800	Enhancers	Brain Angular Gyrus	brain
24	chr4:99505000-99510400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:99505200-99508000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:99505200-99510200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:99505400-99508000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:99505600-99508000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:99506200-99507600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:99506400-99507800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:99506400-99509600	Enhancers	Fetal Brain Male	brain
32	chr4:99506600-99507200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:99506600-99507200	Enhancers	Ovary	ovary
34	chr4:99506600-99507800	Enhancers	Brain Cingulate Gyrus	brain
35	chr4:99506600-99507800	Enhancers	Brain Substantia Nigra	brain
36	chr4:99506800-99507600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:99506800-99508000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:99506800-99508000	Enhancers	Brain Germinal Matrix	brain
39	chr4:99506800-99508400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:99506800-99509600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:99507000-99507200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr4:99507000-99507200	Enhancers	NHDF-Ad	bronchial
43	chr4:99507000-99508000	Weak transcription	Esophagus	oesophagus
44	chr4:99507000-99508200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr4:99507000-99508200	Enhancers	HMEC	breast
46	chr4:99507000-99508200	Enhancers	NHEK	skin
47	chr4:99507000-99508400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr4:99507000-99508400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr4:99507000-99508400	Enhancers	Fetal Lung	lung
50	chr4:99507000-99508600	Enhancers	Fetal Heart	heart

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