Variant report

Variant	rs17027847
Chromosome Location	chr4:99527616-99527617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99520635..99523456-chr4:99526451..99529728,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12507322	1.00[CEU][hapmap]
rs12509107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17027851	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs846012	0.83[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99522200-99532200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:99522400-99528800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:99523400-99528400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:99523600-99532200	Weak transcription	HMEC	breast
6	chr4:99524000-99530400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:99524000-99535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:99524400-99529400	Weak transcription	Primary T cells from cord blood	blood
9	chr4:99524600-99529800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:99525000-99527800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:99525000-99528000	Weak transcription	Fetal Thymus	thymus
12	chr4:99525200-99530200	Enhancers	Fetal Heart	heart
13	chr4:99525400-99529400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:99525400-99529600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:99525400-99530400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:99525400-99531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:99525400-99533200	Weak transcription	Fetal Lung	lung
18	chr4:99525600-99528200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:99525600-99528400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:99525600-99529400	Weak transcription	Brain Angular Gyrus	brain
21	chr4:99525600-99529400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:99525800-99528000	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:99525800-99529400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:99525800-99529400	Weak transcription	Brain Substantia Nigra	brain
25	chr4:99525800-99529800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:99525800-99530000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:99525800-99530400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:99525800-99530600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr4:99525800-99530800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:99526000-99527800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:99526000-99529600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:99526000-99529600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:99526000-99530400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:99526600-99528200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:99526800-99528800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:99527000-99528200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:99527000-99528800	Enhancers	Fetal Brain Female	brain
38	chr4:99527000-99531400	Enhancers	Thymus	Thymus
39	chr4:99527000-99531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:99527200-99528000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:99527200-99528000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:99527200-99528000	Weak transcription	Ovary	ovary
43	chr4:99527200-99528800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr4:99527200-99529200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:99527200-99529400	Weak transcription	Fetal Brain Male	brain
46	chr4:99527200-99529600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:99527200-99530400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:99527200-99531000	Weak transcription	NH-A	brain
49	chr4:99527200-99531800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr4:99527200-99532200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links