Variant report

Variant	rs17027980
Chromosome Location	chr4:152788608-152788609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17027984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028004	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35873670	1.00[AMR][1000 genomes]
rs57313649	0.91[AFR][1000 genomes]
rs60591855	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2753949	chr4:152764038-152794700	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2757086	chr4:152776271-152809738	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759289	chr4:152776271-152809738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv16590	chr4:152778545-152790136	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1030973	chr4:152779838-152792879	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152780800-152789000	Enhancers	Fetal Brain Male	brain
2	chr4:152781200-152794800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152785200-152789400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:152786000-152789000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:152786000-152789000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr4:152786200-152789200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:152786400-152788800	Enhancers	Fetal Brain Female	brain
8	chr4:152787600-152789000	Enhancers	Dnd41	blood
9	chr4:152787800-152788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:152788200-152789200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:152788600-152788800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:152788600-152788800	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:152788600-152789200	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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