Variant report

Variant	rs17027990
Chromosome Location	chr4:152789393-152789394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10013151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019474	1.00[MEX][hapmap]
rs11932027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28523344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs901211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2753949	chr4:152764038-152794700	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2757086	chr4:152776271-152809738	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759289	chr4:152776271-152809738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv16590	chr4:152778545-152790136	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1030973	chr4:152779838-152792879	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3467699	chr4:152788802-152794500	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv10587	chr4:152789231-152794936	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv595720	chr4:152789287-152794644	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3467700	chr4:152789309-152794500	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3467698	chr4:152789309-152795013	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2760840	chr4:152789393-152794700	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2753499	chr4:152789393-152794700	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2753992	chr4:152789393-152794700	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2756438	chr4:152789393-152794700	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2756509	chr4:152789393-152794700	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2752466	chr4:152789393-152796767	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv2752955	chr4:152789393-152796767	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2753159	chr4:152789393-152796767	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv2753180	chr4:152789393-152796767	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv2753602	chr4:152789393-152796767	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2754031	chr4:152789393-152796767	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv2754203	chr4:152789393-152796767	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv2754258	chr4:152789393-152796767	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv2754606	chr4:152789393-152796767	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv2754843	chr4:152789393-152796767	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv2756543	chr4:152789393-152796767	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv432645	chr4:152789393-152797766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv2754342	chr4:152789393-152798621	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv2755596	chr4:152789393-152798621	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv2752477	chr4:152789393-152799374	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv2752342	chr4:152789393-152805443	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv2753274	chr4:152789393-152805609	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152781200-152794800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:152785200-152789400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:152789000-152789400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:152789000-152791200	Weak transcription	Fetal Brain Male	brain
5	chr4:152789000-152796200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:152789200-152789400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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