Variant report

Variant	rs1702891
Chromosome Location	chr6:117439139-117439140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117432728..117435225-chr6:117439078..117441229,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1084690	0.85[EUR][1000 genomes]
rs1084694	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1702890	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17078890	0.85[EUR][1000 genomes]
rs1724765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202760	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2353848	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862826	0.86[ASN][1000 genomes]
rs472149	0.85[EUR][1000 genomes]
rs474344	0.85[EUR][1000 genomes]
rs475755	0.85[EUR][1000 genomes]
rs476918	0.85[EUR][1000 genomes]
rs480564	0.85[EUR][1000 genomes]
rs488678	0.85[EUR][1000 genomes]
rs490789	0.85[EUR][1000 genomes]
rs492516	0.85[EUR][1000 genomes]
rs4946222	0.85[EUR][1000 genomes]
rs4946223	0.85[EUR][1000 genomes]
rs4946224	0.85[EUR][1000 genomes]
rs4946229	0.85[EUR][1000 genomes]
rs498589	0.85[EUR][1000 genomes]
rs500635	0.85[EUR][1000 genomes]
rs500686	0.85[EUR][1000 genomes]
rs501270	0.85[EUR][1000 genomes]
rs501347	0.85[EUR][1000 genomes]
rs504809	0.85[EUR][1000 genomes]
rs508672	0.85[EUR][1000 genomes]
rs512855	0.85[EUR][1000 genomes]
rs512954	0.85[EUR][1000 genomes]
rs528848	0.85[EUR][1000 genomes]
rs529634	0.85[EUR][1000 genomes]
rs530738	0.85[EUR][1000 genomes]
rs536114	0.85[EUR][1000 genomes]
rs544549	0.85[EUR][1000 genomes]
rs552132	0.85[EUR][1000 genomes]
rs568601	0.85[EUR][1000 genomes]
rs571477	0.86[ASN][1000 genomes]
rs576788	0.85[EUR][1000 genomes]
rs579268	0.85[EUR][1000 genomes]
rs692791	0.85[EUR][1000 genomes]
rs693099	0.85[EUR][1000 genomes]
rs693248	0.85[EUR][1000 genomes]
rs783365	0.85[EUR][1000 genomes]
rs783366	0.85[EUR][1000 genomes]
rs783367	0.85[EUR][1000 genomes]
rs783369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs783384	0.85[EUR][1000 genomes]
rs810678	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791230	0.85[EUR][1000 genomes]
rs9791319	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117435600-117440200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:117438200-117440000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:117438600-117439400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:117438800-117439200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:117439000-117439400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:117439000-117439400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links