Variant report

Variant	rs17029299
Chromosome Location	chr1:112568290-112568291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs269109	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3008537	1.00[MEX][hapmap]
rs593260	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112567600-112568600	Enhancers	Fetal Stomach	stomach
2	chr1:112567600-112569000	Enhancers	Spleen	Spleen
3	chr1:112567800-112569200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:112567800-112569200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:112568000-112569400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:112568200-112568800	Enhancers	Brain Germinal Matrix	brain
7	chr1:112568200-112569000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:112568200-112570000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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