Variant report

Variant	rs17029642
Chromosome Location	chr2:98916482-98916483
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4614979	1.00[AFR][1000 genomes]
rs4851958	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98915200-98917000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:98915400-98917200	Enhancers	Gastric	stomach
3	chr2:98915800-98916800	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:98915800-98916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:98916000-98916800	Weak transcription	Brain Angular Gyrus	brain
6	chr2:98916000-98916800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:98916000-98916800	Enhancers	Stomach Smooth Muscle	stomach
8	chr2:98916000-98917000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr2:98916000-98917200	Enhancers	Brain Substantia Nigra	brain
10	chr2:98916000-98918400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:98916200-98916600	Weak transcription	Colonic Mucosa	Colon
12	chr2:98916200-98916600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr2:98916200-98916600	Weak transcription	Esophagus	oesophagus
14	chr2:98916200-98916800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:98916200-98917000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr2:98916400-98917000	Enhancers	Brain Hippocampus Middle	brain
17	chr2:98916400-98917200	Enhancers	Brain Anterior Caudate	brain
18	chr2:98916400-98919000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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