The 2.0 version of rSNPBase

Variant report

Variant rs17030455
Chromosome Location chr1:113068917-113068918
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:113052000-113082600 Weak transcription Brain Angular Gyrus brain
2 chr1:113052200-113093200 Weak transcription Brain Substantia Nigra brain
3 chr1:113055800-113085200 Weak transcription Thymus Thymus
4 chr1:113057800-113069600 Weak transcription Brain Inferior Temporal Lobe brain
5 chr1:113058400-113069600 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:113058400-113086600 Weak transcription A549 lung
7 chr1:113058600-113069400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:113058800-113119400 Weak transcription HepG2 liver
9 chr1:113059200-113071600 Weak transcription Hela-S3 cervix
10 chr1:113059600-113069600 Weak transcription Spleen Spleen
11 chr1:113060200-113069600 Weak transcription Aorta Aorta
12 chr1:113060200-113132400 Weak transcription Pancreas Pancrea
13 chr1:113060400-113070400 Weak transcription HMEC breast
14 chr1:113061200-113072200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr1:113061400-113081200 Weak transcription Colon Smooth Muscle Colon
16 chr1:113062400-113117400 Weak transcription Psoas Muscle Psoas
17 chr1:113063400-113092400 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:113064400-113132200 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:113064600-113071000 Strong transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:113065000-113092400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:113065200-113114800 Weak transcription Small Intestine intestine
22 chr1:113065400-113069800 Weak transcription Primary T cells fromperipheralblood blood
23 chr1:113065400-113114600 Weak transcription Fetal Brain Male brain
24 chr1:113065600-113070200 Weak transcription Fetal Kidney kidney
25 chr1:113065800-113071000 Strong transcription Fetal Muscle Trunk muscle
26 chr1:113065800-113086200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:113066000-113069800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:113066000-113069800 Weak transcription Placenta Amnion Placenta Amnion
29 chr1:113066000-113070000 Weak transcription Monocytes-CD14+_RO01746 blood
30 chr1:113066000-113088800 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:113066000-113114600 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:113066000-113132200 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:113066200-113070200 Weak transcription Primary hematopoietic stem cells blood
34 chr1:113066200-113114400 Weak transcription Dnd41 blood
35 chr1:113066400-113070600 Enhancers HUES6 Cell Line embryonic stem cell
36 chr1:113066600-113081200 Weak transcription Primary B cells from peripheral blood blood
37 chr1:113066800-113070200 Strong transcription Brain Cingulate Gyrus brain
38 chr1:113066800-113070600 Strong transcription Placenta Placenta
39 chr1:113066800-113071000 Strong transcription Brain Germinal Matrix brain
40 chr1:113066800-113071800 Strong transcription Liver Liver
41 chr1:113066800-113072800 Strong transcription Fetal Muscle Leg muscle
42 chr1:113067000-113069000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr1:113067000-113069000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr1:113067000-113070200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:113067000-113070400 Strong transcription Fetal Intestine Small intestine
46 chr1:113067000-113070600 Strong transcription Sigmoid Colon Sigmoid Colon
47 chr1:113067000-113070800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:113067000-113070800 Strong transcription Fetal Brain Female brain
49 chr1:113067000-113071000 Strong transcription Adipose Nuclei Adipose
50 chr1:113067000-113083800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015