Variant report

Variant	rs17030594
Chromosome Location	chr4:101817005-101817006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34103148	0.85[AFR][1000 genomes]
rs58903468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101811600-101817200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:101816200-101817400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr4:101816200-101817400	Enhancers	Small Intestine	intestine
4	chr4:101816200-101817400	Flanking Active TSS	Dnd41	blood
5	chr4:101816400-101817200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:101816400-101817200	Active TSS	Primary T cells fromperipheralblood	blood
7	chr4:101816400-101817200	Active TSS	Primary hematopoietic stem cells	blood
8	chr4:101816400-101817200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr4:101816400-101817200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:101816400-101817400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:101816400-101817400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:101816400-101817400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:101816400-101817400	Active TSS	Adipose Nuclei	Adipose
14	chr4:101816400-101817400	Active TSS	Monocytes-CD14+_RO01746	blood
15	chr4:101816600-101817200	Active TSS	Primary B cells from cord blood	blood
16	chr4:101816600-101817200	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr4:101816600-101817200	Active TSS	Primary T cells from cord blood	blood
18	chr4:101816600-101817200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:101816600-101817200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr4:101816600-101817200	Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr4:101816600-101817200	Active TSS	Muscle Satellite Cultured Cells	--
22	chr4:101816600-101817200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:101816600-101817200	Active TSS	Brain Anterior Caudate	brain
24	chr4:101816600-101817200	Active TSS	Brain Hippocampus Middle	brain
25	chr4:101816600-101817200	Active TSS	Colon Smooth Muscle	Colon
26	chr4:101816600-101817200	Active TSS	Duodenum Mucosa	Duodenum
27	chr4:101816600-101817200	Active TSS	Ovary	ovary
28	chr4:101816600-101817200	Active TSS	Rectal Smooth Muscle	rectum
29	chr4:101816600-101817200	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr4:101816600-101817200	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr4:101816600-101817200	Active TSS	Thymus	Thymus
32	chr4:101816600-101817200	Active TSS	NHDF-Ad	bronchial
33	chr4:101816600-101817400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:101816600-101817400	Active TSS	Colonic Mucosa	Colon
35	chr4:101816600-101817400	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr4:101816600-101817400	Active TSS	Right Atrium	heart
37	chr4:101816600-101817400	Active TSS	NHLF	lung
38	chr4:101816800-101817200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:101816800-101817200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr4:101816800-101817200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:101816800-101817200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr4:101816800-101817200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:101816800-101817200	Active TSS	Liver	Liver
44	chr4:101816800-101817200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr4:101816800-101817200	Active TSS	A549	lung
46	chr4:101816800-101817200	Active TSS	HUVEC	blood vessel
47	chr4:101816800-101817400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:101817000-101817200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr4:101817000-101817200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr4:101817000-101817200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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