Variant report

Variant	rs17031214
Chromosome Location	chr1:113752432-113752433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:113750846..113752700-chr1:113930729..113933907,3	MCF-7	breast:
2	chr1:113751160..113752973-chr1:113930438..113931950,2	MCF-7	breast:
3	chr1:113751528..113753690-chr1:113759429..113761422,2	MCF-7	breast:
4	chr1:113749316..113750880-chr1:113751390..113752895,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081026	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12136941	1.00[MEX][hapmap]
rs17442872	1.00[JPT][hapmap]
rs4839292	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012119	chr1:113214869-113759081	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv535060	chr1:113214869-113759081	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	nsv529238	chr1:113229946-113759080	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
4	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv2465	chr1:113731589-113776605	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113745200-113753600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:113745400-113754200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:113748400-113754800	Enhancers	Fetal Intestine Large	intestine
4	chr1:113748600-113752600	Enhancers	K562	blood
5	chr1:113750800-113753400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:113751400-113754200	Enhancers	Fetal Intestine Small	intestine
7	chr1:113751600-113752600	Enhancers	Colonic Mucosa	Colon
8	chr1:113751600-113752600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr1:113751800-113752600	Enhancers	Fetal Kidney	kidney
10	chr1:113751800-113752800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr1:113751800-113753200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr1:113752000-113753600	Weak transcription	Gastric	stomach
13	chr1:113752200-113752600	Enhancers	GM12878-XiMat	blood
14	chr1:113752200-113752800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:113752200-113753200	Active TSS	Rectal Smooth Muscle	rectum
16	chr1:113752200-113753400	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:113752400-113752800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:113752400-113752800	Weak transcription	Lung	lung
19	chr1:113752400-113753000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:113752400-113753000	Weak transcription	Pancreas	Pancrea
21	chr1:113752400-113753200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links