Variant report

Variant	rs17031370
Chromosome Location	chr3:34217406-34217407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17031581	1.00[AMR][1000 genomes]
rs17031584	1.00[AMR][1000 genomes]
rs60623514	1.00[AMR][1000 genomes]
rs6785311	1.00[AMR][1000 genomes]
rs6798027	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34215600-34217800	Enhancers	Dnd41	blood
2	chr3:34216000-34217800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:34216200-34217600	Enhancers	Thymus	Thymus
4	chr3:34216200-34217800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:34216200-34217800	Enhancers	Fetal Intestine Small	intestine
6	chr3:34216200-34218600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:34216600-34217800	Enhancers	Duodenum Mucosa	Duodenum
8	chr3:34216600-34217800	Enhancers	Fetal Intestine Large	intestine
9	chr3:34216600-34218400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:34216800-34217800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:34216800-34218400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:34216800-34218800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:34217000-34217800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr3:34217000-34219200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr3:34217200-34217600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:34217200-34217600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr3:34217400-34217800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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