Variant report
Variant | rs17031460 |
---|---|
Chromosome Location | chr1:113919893-113919894 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:113911404..113914976-chr1:113918740..113920937,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10494154 | 0.91[ASN][1000 genomes] |
rs10494161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11799926 | 0.91[ASN][1000 genomes] |
rs11804626 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11806095 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17031430 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17031440 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35381019 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4839321 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap] |
rs4839322 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap] |
rs5023142 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap] |
rs61817493 | 0.95[AMR][1000 genomes] |
rs61817535 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61817538 | 0.92[EUR][1000 genomes] |
rs6537789 | 0.94[EUR][1000 genomes] |
rs7533701 | 0.95[ASN][1000 genomes] |
rs7551268 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv427719 | chr1:113570229-114078388 | Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
2 | nsv999873 | chr1:113840351-113949453 | Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
3 | nsv1009534 | chr1:113856612-113920889 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1010110 | chr1:113856612-113969417 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
5 | nsv1013228 | chr1:113861524-113919893 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1005599 | chr1:113861524-113920889 | Weak transcription Active TSS Enhancers Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1012143 | chr1:113861524-113930779 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
8 | nsv1014757 | chr1:113861524-113969417 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 17 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:113918800-113931200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr1:113918800-113931200 | Weak transcription | Right Atrium | heart |