Variant report

Variant	rs17032126
Chromosome Location	chr4:103088491-103088492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13112324	0.81[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1352175	1.00[AFR][1000 genomes]
rs17031974	1.00[AFR][1000 genomes]
rs17032121	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs189328	0.81[AMR][1000 genomes]
rs236775	0.81[AMR][1000 genomes]
rs236777	0.81[AMR][1000 genomes]
rs236779	0.81[AMR][1000 genomes]
rs34934650	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56127520	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72688545	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17032126	PRPF38B	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103084200-103090600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:103085200-103089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:103085600-103089800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:103087600-103095800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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