Variant report

Variant	rs17032129
Chromosome Location	chr1:114560395-114560396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2938339	0.93[CEU][hapmap]
rs3006985	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3006986	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114545800-114562600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:114547400-114568600	Weak transcription	Right Atrium	heart
3	chr1:114551400-114560400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:114551400-114561400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:114551800-114561200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:114551800-114561600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:114552000-114564400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:114552400-114565600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:114554000-114561000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:114557400-114566000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:114558200-114566000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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