Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:66660853..66662652-chr2:67065892..67067778,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143995	Chromatin interaction

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17032617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17032628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67055400-67066800	Weak transcription	Fetal Kidney	kidney
2	chr2:67055400-67066800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:67056800-67066800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:67061400-67066600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:67061400-67066600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:67061400-67072800	Weak transcription	Pancreas	Pancrea
7	chr2:67061600-67067000	Weak transcription	Fetal Lung	lung
8	chr2:67063600-67068200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:67065200-67066800	Enhancers	NHEK	skin
10	chr2:67065200-67068200	Enhancers	HMEC	breast
11	chr2:67065200-67069000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:67065600-67067400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:67065600-67067400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:67065600-67067800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:67065600-67068400	Enhancers	NH-A	brain
16	chr2:67065600-67068600	Enhancers	NHDF-Ad	bronchial
17	chr2:67065800-67067800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:67066000-67066800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:67066000-67067400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:67066200-67066800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:67066200-67067400	Enhancers	NHLF	lung

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