Variant report

Variant	rs17032779
Chromosome Location	chr4:103466250-103466251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103447755..103449902-chr4:103466038..103467792,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4648016	1.00[MEX][hapmap]
rs4648069	1.00[MEX][hapmap]
rs4648116	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1004030	chr4:103419352-103504042	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537203	chr4:103419352-103504042	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103440000-103484800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:103440200-103473200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:103440200-103478600	Weak transcription	Right Ventricle	heart
4	chr4:103440200-103488200	Weak transcription	Gastric	stomach
5	chr4:103441400-103469400	Weak transcription	Ovary	ovary
6	chr4:103441400-103482000	Weak transcription	Spleen	Spleen
7	chr4:103443200-103474200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:103443200-103496000	Weak transcription	A549	lung
9	chr4:103444400-103470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:103444800-103473000	Weak transcription	Small Intestine	intestine
11	chr4:103445000-103496600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:103445200-103470000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:103446200-103469200	Weak transcription	Pancreas	Pancrea
14	chr4:103446200-103469800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:103447200-103474000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:103449000-103467000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr4:103449400-103467000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr4:103449600-103467800	Weak transcription	Fetal Kidney	kidney
19	chr4:103455400-103474600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:103456400-103472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:103456400-103473400	Weak transcription	Fetal Lung	lung
22	chr4:103456800-103475600	Weak transcription	Brain Anterior Caudate	brain
23	chr4:103457200-103467000	Strong transcription	Primary B cells from cord blood	blood
24	chr4:103457200-103474800	Weak transcription	NHLF	lung
25	chr4:103457800-103471600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:103458000-103475200	Weak transcription	NHDF-Ad	bronchial
27	chr4:103458800-103467800	Weak transcription	Stomach Mucosa	stomach
28	chr4:103458800-103473600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr4:103459000-103469400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:103461200-103469400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:103461200-103469400	Weak transcription	Fetal Stomach	stomach
32	chr4:103461200-103474800	Weak transcription	Osteobl	bone
33	chr4:103461200-103487800	Weak transcription	Colonic Mucosa	Colon
34	chr4:103461200-103490400	Weak transcription	Dnd41	blood
35	chr4:103461400-103466400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:103461400-103469400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:103461600-103485400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:103461600-103496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:103462600-103466400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:103462600-103467000	Strong transcription	Adipose Nuclei	Adipose
41	chr4:103462800-103469600	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:103463200-103468200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:103463200-103468600	Weak transcription	Esophagus	oesophagus
44	chr4:103463200-103469400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr4:103463200-103469800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr4:103463200-103469800	Weak transcription	Left Ventricle	heart
47	chr4:103463200-103470800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:103463200-103471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:103463200-103471600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:103463200-103472200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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